Different Average Utilitys from .HBU file and SMRT
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The problem had to do with rescaling utilities of "bad" respondents. This was the first time it happened but I think this is an important validation to do in every study where rescale is used.
Here are the steps that I used to find it:
1 – Rescale the individual utilities from the .hbu file to give the utilities used in SMRT using Zero Centered Diffs Rescale Method:
Calculate a Rescale Ratio for each respondent [Rescale Ratio =100/sum of ranges of attributes*number of attributes (not considering the none option)]
Multiple each level (plus the none option) by the Rescale Ratio
2 – Analyze the utilities from each respondent.
The problem was in two respondents whose utilities were extremely close, giving a sum of ranges of attributes below 1. This gave a huge Rescale Ratio that was multiplying with a negative None Option, distorting the average utility to absurd values. This happened because these two respondents had chosen always the same answer in all the choice tasks (clearly they were very bad cases, fact that was also confirmed by their low RLH).
In conclusion, to avoid this type of problem, one should first check whether the sum of ranges of attributes is below or above 1. If they are below, they probably should be excluded from the analysis.